3.2 ARU projects

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Clicking on the ARU sensor on the main project dashboard will show which projects you have access to. The list of projects you see is determined by your organization membership, project membership and the status of the project. You can use the filter and sort some of the project attributes to find what you’re looking for:

  • Project name
  • Organization
  • Project status
  • Due date
  • Total number of tasks
  • Total number of completed tasks

You can also click on the  to find out more details about the project or to Request Access. The toggle filters the default view to only projects to which you are a member (either administrator or read-only).3.2.1 ARU project management

3.2.1.1 Creating an ARU project

Click on  . This will open the Project Settings form allowing you to add information to the project including:

  • Project Title: A short name to identify the project
  • Organization: Drop-down list of all existing organizations of which you are an admin. This field allows you to group all of your projects together in the database. Once your project is saved you will be unable to change the organization to which it belongs.
  • Year: The year the data was collected.
  • Data Source: If you are importing data from an outside source (e.g. previously tagged data), please specify the original source of the data.
  • Due Date: The anticipated processing completion date. Your taggers can use this as a guideline as to when their image sets are due.
  • Description: This field allows you to outline the purpose, goals, objectives, and methods of your project.
  • Status: See more in publishing projects

 

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3.2.1.2 Adding users to your project

Once you save your project details, you’ll be able to manage the users you’d like to add to the project. Select the  tab to add and view current administrator and read only project members.

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  • Project administrators have both read and write access to the project details, settings. They can add users to the project and can assign taggers to tasks.
  • Project read access members can view project details, and settings, and all tasks within the project. However, they can only edit tasks assigned to them.

Once you have created your project and close the window, the new project will be visible in the ARU project list. Click on the project title to enter the project page or click to edit project details, settings or users.

3.2.2 Recording management

A recording is the raw media or audio file that is uploaded to an ARU project in WildTrax.

3.2.2.1 Subsetting recordings

A typical ten minute, CD quality wav file is ~100 MB. Depending on the scale of your monitoring program, you may be collecting terabytes of data quite quickly. It can be more efficient to choose which recordings will be uploaded to WildTrax for processing instead of uploading the entire volume of data. To do this, you can use tools found in the R package, wildRtrax.

wildRtrax, pronounced ‘wilder tracks’, is an R package for ecologists and advanced users who work with environmental sensor data. It contains functions designed to meet most needs in order to organize, analyze and standardize data to the WildTrax infrastructure. wildRtrax is self-contained and must be run under an R statistical environment, and it also depends on many other R packages. It is also set by a free software and distributed under MIT License (c) 2020.

There are three major audio file types used within the wildRtrax framework: wac, wav and mp3.

  • wac are proprietary, lossless compressed file formats developed by Wildlife Acoustics
  • wav is the standard, ubiquitous uncompressed audio file format
  • mp3 a lossy compressed audio file format; works by reducing the accuracy of certain sound components, and eliminating others
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Even using a high bit rate (b = 320), mp3s significantly reduce the file size. Nevertheless, loss of information in the audio data is an important consideration to make when converting or analyzing audio files. mp3 files that are stored in WildTrax for transcription, for example, truncate all spectrogram data above 12 kHz.

Another important aspect of collecting long-duration acoustic data is ensuring that the number of recordings that were planned on being collected are in fact there. Wildlife Acoustics has a proprietary formatting mechanism called a SET file that can be used to program their ARUs to a set schedule. This functionality is not transferable between different makes of ARUs, so a standard needs to be established. Given that each make and model will have a way of programming this schedule, wildRtrax indexes it by the spatial and temporal information to match distinct recordings like in WildTrax. 

3.2.2.2 Uploading recordings

Once you have your recordings selected that you wish to upload for processing, go to the desired project and click and then

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  • Including subdirectories to scan if your media is layered in a hierarchical structure
  • Removing leading zeros after delimiters helps to clean up the location naming to a generic WildTrax standard. It is not obligatory to use this function but is recommended
  • Recordings uploaded to WildTrax automatically have a task generated for them. This allows a spectrogram to be generated and the task added to the project dashboard. If you un-check this box, the recording will be uploaded to WildTrax and stored in the organization. See media summaries for more information.
  • The default method will be applied to all the recordings you’re uploading - you can select a different method for individual recordings in the next form
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If you're not sure which method to use, jump ahead to the methods section.

  • Click and select the directory that contains your recordings. WildTrax will identify how many files it has scanned which will then allow you to go to the next step
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The next form shows the details of your recording upload prior to initiating it. It’s an important step to review the errors, messages and tabs before proceeding. Here are some things to look out when you’re uploading media:

  • If the location prefix does not fit the WildTrax standard, the row will be returned as NA
  • If the location doesn’t exist yet in the organization, WildTrax will create it
  • If the recording is shorter than the method you indicated by more than 3 seconds (e.g. 56 seconds for a 1 minute method), you’ll be prompted with an error that a recording shorter in length than the desired method should not be uploaded to WildTrax

When you’ve completed reviewing the form, click on to initiate the upload. It is strongly recommended to connect via ethernet if you want to stabilize and ensure internet connectivity while you upload media.

Another way to upload recordings into a project is to download a recording list from the organization. You'll need to be an organization read-only member at a minimum in order to use this function. 

  • Go to the organization to which the project belongs to 
  • Click on the  tab and then the button; there will only be one option in the dropdown to ; this will create a csv with the recordings and required metadata in order to create tasks for project.
    • Organization
    • Location
    • Longitude
    • Latitude
    • Recording date (YYYY-MM-DD HH:MM:SS)
    • Length of the recording (in seconds)
    • Land features (indicated in the visit metadata)
    • Location visit images

Try filtering a set of recordings by land feature and then uploading them to a project.

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3.2.3 Task management

If you’ve checked the box during upload, the new tasks generated from the media are added to the project dashboard under . In brief, a task is a unique combination of a user, a processing method and a recording. This flexibility allows you to generate tasks using the same recording but allow for multiple users or processing methods

Go to the project dashboard and click . The form will display the list of tasks currently in view depending on the toggle - switching the toggle to red allows you to filter the list to only your assigned tasks. The metadata for each one includes the location name, the date and time of the recording, the method it was assigned, the status of the task and the assigned user. 

If you didn't generate tasks when you uploaded recordings to the project, or, if you're using an organization's recordings to create tasks, you can also use the  tool under the button to automatically generate the tasks you need.

If you have hundreds or thousands of tasks without an assigned user, you can use the  button and select users from the dropdown list on the left to assign tasks to. It will randomly, and equally, assign unassigned tasks to the selected user(s).

 

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Alternatively you can click the  individual tasks and assign them to specific members from the dropdown.

You can always go to the organization to look at your summarized media (remember projects are part of organizations). All location media and metadata will be summarized in the organization with links to the project where needed.

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If you're a project administrator, you can also delete tasks from the project dashboard by clicking the  beside the desired task and clicking . Follow the prompts and warnings accordingly as task deletion is permanent and irreversible. 

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3.2.4 Tag management

You can also upload tags